D. van der Spoel: search on Z-Library

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1

Thiamin Function, Metabolism, Uptake, and Transport

Manzetti, Sergio, Zhang, Jin, van der Spoel, David

Journal:

Year:

2014

Language:

english

File:

PDF, 4.46 MB

english, 2014

2

Teachersâ online teaching expectations and experiences during the Covid19-pandemic in the Netherlands

van der Spoel, Irene, Noroozi, Omid, Schuurink, Ellen, van Ginkel, Stan

Journal:

European Journal of Teacher Education

Year:

2020

File:

PDF, 516 KB

2020

3

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

Pronk, S., Pall, S., Schulz, R., Larsson, P., Bjelkmar, P., Apostolov, R., Shirts, M. R., Smith, J. C., Kasson, P. M., van der Spoel, D., Hess, B., Lindahl, E.

Journal:

Year:

2013

Language:

english

File:

PDF, 786 KB

english, 2013

4

Water Determines the Structure and Dynamics of Proteins

Bellissent-Funel, Marie-Claire, Hassanali, Ali, Havenith, Martina, Henchman, Richard, Pohl, Peter, Sterpone, Fabio, van der Spoel, David, Xu, Yao, Garcia, Angel E

Journal:

Chemical Reviews

Year:

2016

Language:

english

File:

PDF, 6.48 MB

english, 2016

5

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

Hess, Berk, Kutzner, Carsten, van der Spoel, David, Lindahl, Erik

Journal:

Journal of Chemical Theory and Computation

Year:

2008

Language:

english

File:

PDF, 383 KB

english, 2008

6

GROMACS: Fast, flexible, and free

David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. C. Berendsen

Journal:

Journal of Computational Chemistry

Year:

2005

Language:

english

File:

PDF, 338 KB

english, 2005

7

GROMACS 3.0: a package for molecular simulation and trajectory analysis

Erik Lindahl, Berk Hess, David van der Spoel

Journal:

Journal of Molecular Modeling

Year:

2001

Language:

english

File:

PDF, 109 KB

english, 2001

8

Comparison of Implicit and Explicit Solvent Models for the Calculation of Solvation Free Energy in Organic Solvents

Zhang, Jin, Zhang, Haiyang, Wu, Tao, Wang, Qi, van der Spoel, David

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 1.93 MB

english, 2017

9

Analytical Model for Predicting Thermal Bridge Effects due to Vacuum Insulation Panel Barrier Envelopes

Martin Tenpierik, Wim van der Spoel, Hans Cauberg

Journal:

Year:

2008

Language:

english

File:

PDF, 211 KB

english, 2008

10

GROMACS: A message-passing parallel molecular dynamics implementation

H.J.C. Berendsen, D. van der Spoel, R. van Drunen

Journal:

Computer Physics Communications

Year:

1995

Language:

english

File:

PDF, 844 KB

english, 1995

11

Predictive analytics for truck arrival time estimation: a field study at a European distribution center

van der Spoel, Sjoerd, Amrit, Chintan, van Hillegersberg, Jos

Journal:

International Journal of Production Research

Year:

2015

Language:

english

File:

PDF, 1.69 MB

english, 2015

12

An Analytical Model for Calculating Thermal Bridge Effects in High Performance Building Enclosure

Tenpierik, M., van Der Spoel, W., Cauberg, H.

Journal:

Journal of Building Physics

Year:

2008

Language:

english

File:

PDF, 448 KB

english, 2008

13

Unusual swimming mechanism in Calycopsis borchgrevinki (Hydrozoa)

van der Spoel, S.

Journal:

Journal of Plankton Research

Year:

1992

Language:

english

File:

PDF, 854 KB

english, 1992

14

The cell biology of disease: Lysosomal storage disorders: The cellular impact of lysosomal dysfunction

Platt, F. M., Boland, B., van der Spoel, A. C.

Journal:

The Journal of Cell Biology

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

15

Neostigmine resolves critical illness-related colonic ileus in intensive care patients with multiple organ failure – a prospective, double-blind, placebo-controlled trial

J. van der Spoel, H. Oudemans-van Straaten, C. Stoutenbeek, R. Bosman, D. Zandstra

Journal:

Intensive Care Medicine

Year:

2001

Language:

english

File:

PDF, 88 KB

english, 2001

16

Thermodynamics of Hydrogen Bonding in Hydrophilic and Hydrophobic Media

van der Spoel, David, van Maaren, Paul J., Larsson, Per, Tîmneanu, Nicuşor

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 173 KB

english, 2006

17

Atomistic Simulation of Protein Encapsulation in Metal–Organic Frameworks

Zhang, Haiyang, Lv, Yongqin, Tan, Tianwei, van der Spoel, David

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 3.39 MB

english, 2016

18

Phase-Transferable Force Field for Alkali Halides

Walz, Marie-Madeleine, Ghahremnapour, Mohammad Mehdi, van Maaren, Paul J., van der Spoel, David

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 2.30 MB

english, 2018

19

Chemical Properties, Environmental Fate, and Degradation of Seven Classes of Pollutants

Manzetti, Sergio, van der Spoel, E. Roos, van der Spoel, David

Journal:

Chemical Research in Toxicology

Year:

2014

Language:

english

File:

PDF, 5.33 MB

english, 2014

20

The measurement of the diffusion coefficient of water in paints and polymers from their swelling by using an interferometric technique

E.L.J. Goossens, A.J.J. van der Zanden, H.L.M. Wijen, W.H. van der Spoel

Journal:

Progress in Organic Coatings (Elsevier)

Year:

2003

Language:

english

File:

PDF, 123 KB

english, 2003

21

GROMACS molecule & liquid database

van der Spoel, D., van Maaren, P. J., Caleman, C.

Journal:

Year:

2012

Language:

english

File:

PDF, 164 KB

english, 2012

22

Evaluation of Generalized Born Models for Large Scale Affinity Prediction of Cyclodextrin Host−Guest Complexes

Zhang, Haiyang, Yin, Chunhua, Yan, Hai, van der Spoel, David

Journal:

Journal of Chemical Information and Modeling

Year:

2016

Language:

english

File:

PDF, 1.33 MB

english, 2016

23

GROMACS—the road ahead

David van der Spoel, Berk Hess

Journal:

Wiley Interdisciplinary Reviews: Computational Molecular Science

Year:

2011

Language:

english

File:

PDF, 123 KB

english, 2011

24

Lack of enzyme activity in GBA2 mutants associated with hereditary spastic paraplegia/cerebellar ataxia (SPG46)

Sultana, Saki, Reichbauer, Jennifer, Schüle, Rebecca, Mochel, Fanny, Synofzik, Matthis, van der Spoel, Aarnoud C.

Journal:

Biochemical and Biophysical Research Communications

Year:

2015

Language:

english

File:

PDF, 823 KB

english, 2015

25

Molecular characterization of circulating tumor cells in large quantities of contaminating leukocytes by a multiplex real-time PCR

Anieta M. Sieuwerts, Jaco Kraan, Joan Bolt-de Vries, Petra van der Spoel, Bianca Mostert, John W. M. Martens, Jan-Willem Gratama, Stefan Sleijfer, John A. Foekens

Journal:

Breast Cancer Research and Treatment

Year:

2009

Language:

english

File:

PDF, 556 KB

english, 2009

26

Large-scale calculations of gas phase thermochemistry: Enthalpy of formation, standard entropy, and heat capacity

Ghahremanpour, Mohammad M., van Maaren, Paul J., Ditz, Jonas C., Lindh, Roland, van der Spoel, David

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 541 KB

english, 2016

27

Systematic design of biomolecular force fields

van der Spoel, David

Journal:

Current Opinion in Structural Biology

Year:

2021

File:

PDF, 891 KB

2021

28

Titelbild: Picosecond Melting of Ice by an Infrared Laser Pulse: A Simulation Study (Angew. Chem. 8/2008)

Carl Caleman, David van der Spoel

Journal:

Angewandte Chemie

Year:

2008

Language:

german

File:

PDF, 857 KB

german, 2008

29

A theoretical study of repeating sequence in HRP II: A combination of molecular dynamics simulations and 17O quadrupole coupling tensors

Hadi Behzadi, Mehdi D. Esrafili, David van der spoel, Nasser L. Hadipour, Gholamabbas Parsafar

Journal:

Biophysical Chemistry

Year:

2008

Language:

english

File:

PDF, 514 KB

english, 2008

30

Molecular Dynamics Simulations of Dodecylphosphocholine Micelles at Three Different Aggregate Sizes: Micellar Structure and Chain Relaxation

Tieleman, D. P., van der Spoel, D., Berendsen, H. J. C.

Journal:

Journal of Physical Chemistry B

Year:

2000

Language:

english

File:

PDF, 307 KB

english, 2000

31

[Radioactivity in the Environment] The Natural Radiation Environment VII: VIIth Int. Symp. On the NRE Volume 7 || Sensitivity analysis of an improved method for measuring the radon diffusion coefficient of porous materials

van der Spoel, W.H.

Year:

2005

Language:

english

File:

PDF, 72 KB

english, 2005

32

Diurnal Rhythm of Biodiversity in a Zooplankton Community of a Macroscale Anticyclonic Gyre

S. Piontkovski, S. van der Spoel and I. Prusova

Journal:

Year:

1999

Language:

english

File:

PDF, 1.58 MB

english, 1999

33

Similar effect of autologous and allogeneic cell therapy for ischemic heart disease: results from a meta-analysis of large animal studies

Jansen Of Lorkeers, S. J., Eding, J. E. C., Van Der Spoel, T. I. G., Vesterinen, H. M., Koudstaal, S., Sena, E. S., Doevendans, P. A., Macleod, M. R., Chamuleau, S. A. J.

Journal:

European Heart Journal

Year:

2013

Language:

english

File:

PDF, 58 KB

english, 2013

34

Diverse Molecular Genotypes of Mycobacterium tuberculosis Complex Isolates Circulating in the Free State, South Africa

Van der Spoel van Dijk, Anneke, Makhoahle, Pakiso M., Rigouts, Leen, Baba, Kamaldeen

Journal:

International Journal of Microbiology

Year:

2016

Language:

english

File:

PDF, 1.40 MB

english, 2016

35

Making Soup: Preparing and Validating Models of the Bacterial Cytoplasm for Molecular Simulation

Oliveira Bortot, Leandro, Bashardanesh, Zahedeh, van der Spoel, David

Journal:

Journal of Chemical Information and Modeling

Year:

2019

File:

PDF, 4.28 MB

2019

36

Hospital mortality is associated with ICU admission time

Hans A. J. M. Kuijsten, Sylvia Brinkman, Iwan A. Meynaar, Peter E. Spronk, Johan I. van der Spoel, Rob J. Bosman, Nicolette F. de Keizer, Ameen Abu-Hanna, Dylan W. de Lange

Journal:

Intensive Care Medicine

Year:

2010

Language:

english

File:

PDF, 255 KB

english, 2010

37

N-butyldeoxynojirimycin causes weight loss as a result of appetite suppression in lean and obese mice

D. A. Priestman, A. C. Van Der Spoel, T. D. Butters, R. A. Dwek, F. M. Platt

Journal:

Diabetes, Obesity and Metabolism

Year:

2008

Language:

english

File:

PDF, 243 KB

english, 2008

38

Insight into the Structural Deformations of Beta-Cyclodextrin Caused by Alcohol Cosolvents and Guest Molecules

Zhang, Haiyang, Ge, Chunling, van der Spoel, David, Feng, Wei, Tan, Tianwei

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.55 MB

english, 2012

39

Molecular Dynamics Simulations of Water with Novel Shell-Model Potentials

van Maaren, Paul J., van der Spoel, David

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 96 KB

english, 2001

40

Cardiopulmonary bypass with modified fluid gelatin and heparin-coated circuits

Jansen, PGM., te Velthuis, H., Wildevuur, W. R., Huybregts, MAJM., Bulder, E. R., van der Spoel, H. I., Sturk, A., Eijsman, L., Wildevuur, CRH.

Journal:

BJA British Journal of Anaesthesia

Year:

1996

Language:

english

File:

PDF, 159 KB

english, 1996

41

Properties of Organic Liquids when Simulated with Long-Range Lennard-Jones Interactions

Fischer, Nina M., van Maaren, Paul J., Ditz, Jonas C., Yildirim, Ahmet, van der Spoel, David

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 927 KB

english, 2015

42

Sensing Membrane Stresses by Protein Insertions

Campelo, Felix, Kozlov, Michael M., van der Spoel, David

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

43

Exploring Early Stages of the Chemical Unfolding of Proteins at the Proteome Scale

Candotti, Michela, Pérez, Alberto, Ferrer-Costa, Carles, Rueda, Manuel, Meyer, Tim, Gelpí, Josep Lluís, Orozco, Modesto, van der Spoel, David

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.20 MB

english, 2013

44

Force Field Benchmark of Organic Liquids. 2. Gibbs Energy of Solvation

Zhang, Jin, Tuguldur, Badamkhatan, van der Spoel, David

Journal:

Journal of Chemical Information and Modeling

Year:

2015

Language:

english

File:

PDF, 833 KB

english, 2015

45

Generalized Born and Explicit Solvent Models for Free Energy Calculations in Organic Solvents: Cyclodextrin Dimerization

Zhang, Haiyang, Tan, Tianwei, van der Spoel, David

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

46

DESCRIPTION OF RANUNCULUS REPENS L. AND RANUNCULUS ARVENSIS L. POLLEN

Bot, J., Van Der Spoel-Walvius, M. R.

Journal:

Acta Botanica Neerlandica

Year:

1968

Language:

english

File:

PDF, 1.07 MB

english, 1968

47

Thyroid Status and Mortality Risk in Older Adults With Normal Thyrotropin: Sex Differences in the Milan Geriatrics 75+ Cohort Study

Ogliari, Giulia, Smit, Roelof A. J., van der Spoel, Evie, Mari, Daniela, Torresani, Erminio, Felicetta, Irene, Lucchi, Tiziano A., Rossi, Paolo D., van Heemst, Diana, de Craen, Anton J. M., Westendorp

Journal:

The Journals of Gerontology Series A Biological Sciences and Medical Sciences

Year:

2016

Language:

english

File:

PDF, 858 KB

english, 2016

48

DIFFUSIVE TRANSPORT OF RADON IN A COLUMN OF MOISTURIZED SAND

van der Spoel, W. H., van der Graaf, E. R., de Meijer, R. J.

Journal:

Year:

1999

Language:

english

File:

PDF, 505 KB

english, 1999

49

Feasibility of electro-reduction of U(VI) in oxalic acid using an electrolytic CEM-separated cell

Potgieter, M., van der Spoel Badenhorst, W. D., Barry, J. C., van der Westhuizen, D. J., Krieg, H. M.

Journal:

Journal of Radioanalytical and Nuclear Chemistry

Year:

2020

File:

PDF, 895 KB

2020

50

Detection of circulating tumor cells in breast cancer may improve through enrichment with anti-CD146

Bianca Mostert, Jaco Kraan, Joan Bolt-de Vries, Petra van der Spoel, Anieta M. Sieuwerts, Mieke Schutte, Annemieke M. Timmermans, Renée Foekens, John W. M. Martens, Jan-Willem Gratama, John A. Foekens

Journal:

Breast Cancer Research and Treatment

Year:

2011

Language:

english

File:

PDF, 611 KB

english, 2011

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